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S9430

SYBR Green I nucleic acid gel stain

greener alternative

10,000 × in DMSO

Synonym(s):

DNA stain, safer gel stain, SYBR green gel dye

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Pack SizeSKUAvailabilityPrice
0.5 mL

Estimated to ship TODAYfromSAINT LOUIS

$526.00
1 mL

Available to ship TODAYfromMILWAUKEE

$957.00

About This Item

CAS Number:
UNSPSC Code:
12171500
NACRES:
NA.52
MDL number:

$526.00


Estimated to ship TODAYDetails


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form

solution

Quality Segment

usage

 mL sufficient for 100 mini-gels

greener alternative product characteristics

Designing Safer Chemicals
Learn more about the Principles of Green Chemistry.

sustainability

Greener Alternative Product

concentration

10,000 × in DMSO

technique(s)

PCR: suitable

greener alternative category

storage temp.

−20°C

General description

SYBR Green I is a proprietary asymmetrical cyanine dye, which is used to detect nucleic acids. It consists of a N-alkylated benzothiazolium or benzoxazolium ring system, that is joined by a monomethine bridge to a pyridinium or quinolinium ring system. SYBR Green I binds to the minor groove of dsDNA and is excited at a wavelength of 480 nm. It has a peak fluorescence emission of 520 nm.

Application

SYBR Green I nucleic acid gel stain has been used for:
  • the quantification of dsDNA
  • to stain DNA in polymerase chain reaction (PCR)
  • for comet assay technique
  • to assess spermatozoon membrane integrity
  • for visual inspection of DNA amplified by loop-mediated isothermal amplification (LAMP)[1]
  • as a fluorescent dye in flow cytometry[2]
  • real-time quantitative reverse transcription-polymerase chain reaction (qRT-PCR) for staining reverse-transcribed cDNA[2]

Features and Benefits

  • An ultrasensitive stain for post-electrophoresis staining of dsDNA in agarose or polyacrylamide gels
  • It can also detect ssDNA and RNA in denaturing agarose/formaldehyde and polyacrylamide/urea gels without any pre-washing steps
  • It is less mutagenic than ethidium bromide in Ames tests
  • It provides 50-100 times greater detection sensitivity than ethidium bromide for oligonucleotides
  • Useful for many applications with a limited amount of DNA
  • The binding of SYBR Green I to DNA does not inhibit the activity of many common restriction endonucleases, including Hind III and EcoR I
  • Removal of this stain in-gel digestion and ligation techniques is not needed
  • SYBR Green I is a greener alternative product to ethidium bromide for staining

Preparation Note

Store the product at –20 °C. The diluted Staining Solution may be stored, protected from light, either at 2–8 °C for several weeks or at room temperature for 3–4 days.

Legal Information

SYBR is a trademark of Thermo Fisher Scientific or its subsidiaries

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S9305SCT124SCT125
technique(s)

PCR: suitable

technique(s)

-

technique(s)

PCR: suitable

technique(s)

PCR: suitable

concentration

10,000 × in DMSO

concentration

10,000 × in DMSO

concentration

-

concentration

-

form

solution

form

-

form

liquid

form

liquid

storage temp.

−20°C

storage temp.

−20°C

storage temp.

-

storage temp.

-

Quality Level

200

Quality Level

100

Quality Level

-

Quality Level

-

greener alternative category

Aligned,

greener alternative category

Aligned,

greener alternative category

-

greener alternative category

-


Storage Class

10 - Combustible liquids

wgk

WGK 3

flash_point_f

201.2 °F - closed cup

flash_point_c

94 °C - closed cup

ppe

Eyeshields, Gloves, multi-purpose combination respirator cartridge (US)



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Protocols

SeqPlex DNA Amplification Kit enables NGS from small or degraded DNA quantities for whole genome amplification.

Hot start dNTP protocol enhances specificity in PCR by blocking DNA polymerase nucleotide incorporation during PCR.

The SeqPlex RNA Amplification kit provides a method for amplification of total RNA or isolated mRNA prior to entry into the workflows of the commonly used deep sequencing platforms.

View All Protocols

Articles

SeqPlex™-I WTA kit amplifies RNA for NGS, enabling genomic studies from limited samples.


Advances in Clinical Chemistry (2005)
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Tyshko NV and Shestakova SI
Toxicology Reports, 6, 151-154 (2019)
Muhammad Zaeem Noman et al.
The Journal of experimental medicine, 211(5), 781-790 (2014-04-30)
Tumor-infiltrating myeloid cells such as myeloid-derived suppressor cells (MDSCs) and tumor-associated macrophages (TAMs) form an important component of the hypoxic tumor microenvironment. Here, we investigated the influence of hypoxia on immune checkpoint receptors (programmed death [PD]-1 and CTLA-4) and their



Global Trade Item Number

SKUGTIN
S9430-.5ML04061837899140
S9430-1ML04061837899164

Questions

1–5 of 5 Questions  
  1. Which final concentration is recommended for staining PCR products in agarose gel with UV transiluminator from de 10000x S9430 stock?

    1 answer
    1. It is suggested to prepare the staining solution with a 1:10,000 dilution of this product in one of the following buffers:
      • 1x TE buffer (10 mM Tris-HCl with 1 mM EDTA, pH 8.0)
      • 1x TBE buffer (89 mM Tris base, 89 mM boric acid, and 1 mM EDTA, pH 8.0)
      • 1x TAE buffer (40 mM Tris-acetate with 1 mM EDTA, pH 8.0)
      Note: The buffer should not have been used previously for electrophoresis for optimal results. For optimal sensitivity, verify that the pH is between 7.5 and 8.0 (preferably pH 8.0) as SYBR Green I is pH sensitive.

      Helpful?

  2. Does Millipore Sigma offer SAFE Red loading dye?

    1 answer
    1. SAFE Red loading dye is not offered by Millipore Sigma.

      Helpful?

  3. What is the molarity of this product?

    1 answer
    1. This product is a 10,000X concentrated solution suitable to prepare 10L of staining solution for in-gel staining of DNA and RNA. The specific concentration is considered proprietary. Published working concentrations for solutions of Sybr Green I range from 0.5 - 1.0 ug/ml. The molecular weight as published by Chebi, is 509.74 g/mol. Please see the link below to review the product datasheet:
      https://www.sigmaaldrich.com/deepweb/assets/sigmaaldrich/product/documents/282/803/s9430pis-ms.pdf

      Please see the link below to review the Chebi profile:
      https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:51461


      chebi file
      https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:51461 MW 509.74
      Science direct
      https://www.sciencedirect.com/topics/biochemistry-genetics-and-molecular-biology/sybr-green-i
      'working' concentration 0.5 - 1.0 ug/ml

      Helpful?

  4. Will Product S9430, SYBR® Green I nucleic acid gel stain, stain DNA that contains deaza-G modified nucleotides in place of guanisine?

    1 answer
    1. Product S9430, SYBR® Green I nucleic acid gel stain, will poorly stain DNA containing deaza-G modified nucleotides in place of guanisine.  A way around this issue would be to use a mixture of deaza-G modified nucleotides with guanisine.  This will allow for better staining.

      Helpful?

  5. What is the Department of Transportation shipping information for this product?

    1 answer
    1. Transportation information can be found in Section 14 of the product's (M)SDS.To access the shipping information for this material, use the link on the product detail page for the product.

      Helpful?

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