Skip to Content
MilliporeSigma
Home3D Cell Culture3D Organoid Culture: New In Vitro Models of Development and Disease

3D Organoid Culture: New In Vitro Models of Development and Disease

Read about

2D vs. 3D Cell Model Systems

Model systems drive biological research by recapitulating body processes and functions from the molecular to whole organism level. The human body is composed of both cellular and non-cellular material organized in a highly specialized manner. It is difficult to mimic all aspects of human biology with one in vitro model system. 3D cell culture models are a more accurate representation of the natural environment experienced by cells in the living organism as opposed to growing cells on 2D flat surfaces.

Limitations of Existing Cell Model System

What are Organoids?

Organoids are in-vitro derived 3D cell aggregates derived from primary tissue or stem cells that are capable of self-renewal, self-organization and exhibit organ functionality.3 Organoids address the limitations of existing model systems by providing:

  • Similar composition and architecture to primary tissue: Organoids harbor small population of self-renewing stem cells that can differentiate into cells of all major cell lineages, with similar frequency as in physiological condition.
  • Relevant models of in-vivo conditions: Organoids are more biologically relevant to any model system and are amenable to manipulate niche components and gene sequence.
  • Stable system for extended cultivation: Organoids can be cryopreserved as biobanks and expanded indefinitely by leveraging self-renewal, differentiation capability of stem cell and intrinsic ability to self-organize.
Mouse Intestinal Epithelial Organoids.

Figure 1.Mouse Intestinal Epithelial Organoids. 3D Organoids were generated from adult mouse intestinal tissue following the protocol outlined by Clevers et al. Science. 2013. Organoid cells begin to form lumens and bud structures at around day 3-5 in culture and form complex crypt-like structures around day 7-10. These crypt-like domains are functionally similar to those of the adult intestine, where dividing LGR5+ intestinal stem cells are intercalated with Paneth cells located at the crypt base.

Organoids vs. Spheroids

Organoids and spheroids are both cells cultured in 3 dimensions. Spheroids are often formed from cancer cell lines or tumor biopsies as freely floating cell aggregates in ultra-low attachment plates whereas organoids are derived from tissue stem cells embedded within an ECM hydrogel matrix such as Matrigel. Organoids are highly complex and are more in vivo-like when compared to spheroids. Recently, tumor organoids have shown to predict how well patients respond to cancer drugs to aid in personalized medicine.

Organoids vs. Spheroids

Figure 2.Organoids vs. Spheroids. Stem cell derived organoids have more in vivo-like phenotypes with higher order tissue complexity compared to tumor spheroids.

How are Organoids Generated?

Organoids are generated either from primary tissues or pluripotent stem cells (induced pluripotent stem cells (iPSC) or embryonic stem cells (ESCs)) by providing appropriate physical and biochemical cues4.

Physical cues: Provide support for cell attachment and survival. Examples include collagen, fibronectin, entactin and laminin.

Biochemical cues: Modulate signaling pathways, thereby influencing proliferation, differentiation and self-renewal. Examples include EGF, FGF10, HGF, R-spondin, WNT3A, Retinoic acid, GSK3β inhibitors, TGF-β inhibitors, HDAC inhibitors, ROCK inhibitors, Noggin, Activin A, p38 inhibitors and Gastrin.

Loading

Applications of Organoids

Organoids are physiologically relevant and amenable to molecular and cell biological analyses, holding great promise in both basic research and translational applications.  

Developmental Biology

Organoids derived from ESC, iPSCs retain features of their developmental stage and help in studying the process of embryonic development, lineage specification and tissue homeostasis. It also shed light on development of stem cells and their niche.

  • Development of organs such as brain24, pancreas25 and stomach7 was studied through sequential differentiation steps inducted by modulating Wnt, BMP and FGF signaling pathways

Disease Pathology of Infectious Disease

Organoids represents all components of organ and are suited to study infectious diseases affecting specialized human cell types.

  • Lung organoids derived from iPSCs from healthy child carrying null alleles of interferon regulatory factor- 7 gene  employed to study influenza virus replication 26
  • Forebrain organoids derived from human iPSC was employed to study infection of zika virus on neural progenitors27

Regenerative Medicine

Transplantation of organoids derived from the adult stem cells aid in replacing the damaged organ or tissue. In addition, feasibility for gene correction using CRISPR/Cas9 technology can be used in treating monogenic hereditary diseases.

  • Small intestine organoids retained characteristics of small intestine, such as villus formation and presence of paneth when transplanted in mouse models28

Drug Toxicity and Efficacy Testing

The possibility to test efficacy and toxicity of drugs against representative targets/organs (gut, liver and kidney) could potentially limit the ethical issues associated with animal usage.

  • Hyman kidney organoids were employed to demonstrate the nephrotoxicity of cisplatin 11

Personalized Medicine

Organoids derived from adult stem cell of individual patients allows ex-vivo testing of drug response.

  • Colon organoids were employed to identify treatment options for patients with rare CFTR mutations29
  • Tumor organoids can be employed to assess the drug response at the level of individual patie
Organoids generation from primary tissues and pluripotent stem cells and their applications

Figure 3.Organoids generation from primary tissues and pluripotent stem cells and their applications.

Table 1.Summary of growth factors and biochemical used in the development of various organoids cell types.

Related Organoid Cell Culture Products

Loading
Loading
Loading
Loading
Loading
Loading
Loading
Loading

References

1.
Shanks N, Greek R, Greek J. 2009. Are animal models predictive for humans?. Philos Ethics Humanit Med. 4(1):2. https://doi.org/10.1186/1747-5341-4-2
2.
Yin X, Mead B, Safaee H, Langer R, Karp J, Levy O. 2016. Engineering Stem Cell Organoids. Cell Stem Cell. 18(1):25-38. https://doi.org/10.1016/j.stem.2015.12.005
3.
Lancaster MA, Knoblich JA. 2014. Organogenesis in a dish: Modeling development and disease using organoid technologies. Science. 345(6194):1247125-1247125. https://doi.org/10.1126/science.1247125
4.
Clevers H. 2016. Modeling Development and Disease with Organoids. Cell. 165(7):1586-1597. https://doi.org/10.1016/j.cell.2016.05.082
5.
Eiraku M, Sasai Y. 2012. Self-formation of layered neural structures in three-dimensional culture of ES cells. Current Opinion in Neurobiology. 22(5):768-777. https://doi.org/10.1016/j.conb.2012.02.005
6.
Nakano T, Ando S, Takata N, Kawada M, Muguruma K, Sekiguchi K, Saito K, Yonemura S, Eiraku M, Sasai Y. 2012. Self-Formation of Optic Cups and Storable Stratified Neural Retina from Human ESCs. Cell Stem Cell. 10(6):771-785. https://doi.org/10.1016/j.stem.2012.05.009
7.
McCracken KW, Catá EM, Crawford CM, Sinagoga KL, Schumacher M, Rockich BE, Tsai Y, Mayhew CN, Spence JR, Zavros Y, et al. 2014. Modelling human development and disease in pluripotent stem-cell-derived gastric organoids. Nature. 516(7531):400-404. https://doi.org/10.1038/nature13863
8.
Wong AP, Bear CE, Chin S, Pasceri P, Thompson TO, Huan L, Ratjen F, Ellis J, Rossant J. 2012. Directed differentiation of human pluripotent stem cells into mature airway epithelia expressing functional CFTR protein. Nat Biotechnol. 30(9):876-882. https://doi.org/10.1038/nbt.2328
9.
Huang SXL, Islam MN, O'Neill J, Hu Z, Yang Y, Chen Y, Mumau M, Green MD, Vunjak-Novakovic G, Bhattacharya J, et al. 2014. Efficient generation of lung and airway epithelial cells from human pluripotent stem cells. Nat Biotechnol. 32(1):84-91. https://doi.org/10.1038/nbt.2754
10.
Takebe T, Sekine K, Enomura M, Koike H, Kimura M, Ogaeri T, Zhang R, Ueno Y, Zheng Y, Koike N, et al. 2013. Vascularized and functional human liver from an iPSC-derived organ bud transplant. Nature. 499(7459):481-484. https://doi.org/10.1038/nature12271
11.
Takasato M, Er PX, Chiu HS, Maier B, Baillie GJ, Ferguson C, Parton RG, Wolvetang EJ, Roost MS, Chuva de Sousa Lopes SM, et al. 2015. Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis. Nature. 526(7574):564-568. https://doi.org/10.1038/nature15695
12.
Sato T, Clevers H. 2013. Growing Self-Organizing Mini-Guts from a Single Intestinal Stem Cell: Mechanism and Applications. Science. 340(6137):1190-1194. https://doi.org/10.1126/science.1234852
13.
Bartfeld S, Bayram T, van de Wetering M, Huch M, Begthel H, Kujala P, Vries R, Peters PJ, Clevers H. 2015. In Vitro Expansion of Human Gastric Epithelial Stem Cells and Their Responses to Bacterial Infection. Gastroenterology. 148(1):126-136.e6. https://doi.org/10.1053/j.gastro.2014.09.042
14.
Huch M, Gehart H, van Boxtel R, Hamer K, Blokzijl F, Verstegen M, Ellis E, van Wenum M, Fuchs S, de Ligt J, et al. 2015. Long-Term Culture of Genome-Stable Bipotent Stem Cells from Adult Human Liver. Cell. 160(1-2):299-312. https://doi.org/10.1016/j.cell.2014.11.050
15.
Huch M, Dorrell C, Boj SF, van Es JH, Li VSW, van de Wetering M, Sato T, Hamer K, Sasaki N, Finegold MJ, et al. 2013. In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration. Nature. 494(7436):247-250. https://doi.org/10.1038/nature11826
16.
Huch M, Bonfanti P, Boj SF, Sato T, Loomans CJM, van de Wetering M, Sojoodi M, Li VSW, Schuijers J, Gracanin A, et al. Unlimited in vitro expansion of adult bi-potent pancreas progenitors through the Lgr5/R-spondin axis. EMBO J. 32(20):2708-2721. https://doi.org/10.1038/emboj.2013.204
17.
Karthaus W, Iaquinta P, Drost J, Gracanin A, van Boxtel R, Wongvipat J, Dowling C, Gao D, Begthel H, Sachs N, et al. 2014. Identification of Multipotent Luminal Progenitor Cells in Human Prostate Organoid Cultures. Cell. 159(1):163-175. https://doi.org/10.1016/j.cell.2014.08.017
18.
Linnemann JR, Miura H, Meixner LK, Irmler M, Kloos UJ, Hirschi B, Bartsch HS, Sass S, Beckers J, Theis FJ, et al. 2015. Quantification of regenerative potential in primary human mammary epithelial cells. Development. 142(18):3239-3251. https://doi.org/10.1242/dev.123554
19.
Maimets M, Rocchi C, Bron R, Pringle S, Kuipers J, Giepmans B, Vries R, Clevers H, de Haan G, van Os R, et al. 2016. Long-Term In Vitro Expansion of Salivary Gland Stem Cells Driven by Wnt Signals. Stem Cell Reports. 6(1):150-162. https://doi.org/10.1016/j.stemcr.2015.11.009
20.
Nanduri L, Baanstra M, Faber H, Rocchi C, Zwart E, de Haan G, van Os R, Coppes R. 2014. Purification and Ex Vivo Expansion of Fully Functional Salivary Gland Stem Cells. Stem Cell Reports. 3(6):957-964. https://doi.org/10.1016/j.stemcr.2014.09.015
21.
DeWard A, Cramer J, Lagasse E. 2014. Cellular Heterogeneity in the Mouse Esophagus Implicates the Presence of a Nonquiescent Epithelial Stem Cell Population. Cell Reports. 9(2):701-711. https://doi.org/10.1016/j.celrep.2014.09.027
22.
Mondrinos MJ, Jones PL, Finck CM, Lelkes PI. 2014. Engineering De Novo Assembly of Fetal Pulmonary Organoids. Tissue Engineering Part A. 20(21-22):2892-2907. https://doi.org/10.1089/ten.tea.2014.0085
23.
Boj S, Hwang C, Baker L, Chio I, Engle D, Corbo V, Jager M, Ponz-Sarvise M, Tiriac H, Spector M, et al. 2015. Organoid Models of Human and Mouse Ductal Pancreatic Cancer. Cell. 160(1-2):324-338. https://doi.org/10.1016/j.cell.2014.12.021
24.
Lancaster MA, Renner M, Martin C, Wenzel D, Bicknell LS, Hurles ME, Homfray T, Penninger JM, Jackson AP, Knoblich JA. 2013. Cerebral organoids model human brain development and microcephaly. Nature. 501(7467):373-379. https://doi.org/10.1038/nature12517
25.
Greggio C, De Franceschi F, Figueiredo-Larsen M, Gobaa S, Ranga A, Semb H, Lutolf M, Grapin-Botton A. 2013. Artificial three-dimensional niches deconstruct pancreas development in vitro. Development. 140(21):4452-4462. https://doi.org/10.1242/dev.096628
26.
Ciancanelli MJ, Huang SXL, Luthra P, Garner H, Itan Y, Volpi S, Lafaille FG, Trouillet C, Schmolke M, Albrecht RA, et al. 2015. Life-threatening influenza and impaired interferon amplification in human IRF7 deficiency. Science. 348(6233):448-453. https://doi.org/10.1126/science.aaa1578
27.
Fukuda M, Mizutani T, Mochizuki W, Matsumoto T, Nozaki K, Sakamaki Y, Ichinose S, Okada Y, Tanaka T, Watanabe M, et al. 2014. Small intestinal stem cell identity is maintained with functional Paneth cells in heterotopically grafted epithelium onto the colon. Genes Dev.. 28(16):1752-1757. https://doi.org/10.1101/gad.245233.114
28.
Dekkers JF, Wiegerinck CL, de Jonge HR, Bronsveld I, Janssens HM, de Winter-de Groot KM, Brandsma AM, de Jong NWM, Bijvelds MJC, Scholte BJ, et al. 2013. A functional CFTR assay using primary cystic fibrosis intestinal organoids. Nat Med. 19(7):939-945. https://doi.org/10.1038/nm.3201
29.
Spence JR, Mayhew CN, Rankin SA, Kuhar MF, Vallance JE, Tolle K, Hoskins EE, Kalinichenko VV, Wells SI, Zorn AM, et al. 2011. Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro. Nature. 470(7332):105-109. https://doi.org/10.1038/nature09691
30.
Sato T, Stange DE, Ferrante M, Vries RG, van Es JH, van den Brink S, van Houdt WJ, Pronk A, van Gorp J, Siersema PD, et al. 2011. Long-term Expansion of Epithelial Organoids From Human Colon, Adenoma, Adenocarcinoma, and Barrett's Epithelium. Gastroenterology. 141(5):1762-1772. https://doi.org/10.1053/j.gastro.2011.07.050
31.
Si-Tayeb K, Noto FK, Nagaoka M, Li J, Battle MA, Duris C, North PE, Dalton S, Duncan SA. 2010. Highly efficient generation of human hepatocyte-like cells from induced pluripotent stem cells. Hepatology. 51(1):297-305. https://doi.org/10.1002/hep.23354
32.
Dye BR, Hill DR, Ferguson MA, Tsai Y, Nagy MS, Dyal R, Wells JM, Mayhew CN, Nattiv R, Klein OD, et al. In vitro generation of human pluripotent stem cell derived lung organoids. 4 https://doi.org/10.7554/elife.05098
33.
Takasato M, Er PX, Chiu HS, Little MH. 2016. Generation of kidney organoids from human pluripotent stem cells. Nat Protoc. 11(9):1681-1692. https://doi.org/10.1038/nprot.2016.098
Related Articles
Related Product Categories
Sign In To Continue

To continue reading please sign in or create an account.

Don't Have An Account?