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D4889

Sigma-Aldrich

Deoxyribonucleic acid sodium salt from Escherichia coli strain B

Genomic, unsheared

Synonym(s):

DNA

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0.25 UNIT
$41.42
1 UNIT
$105.41
5 UNITS
$427.00

$41.42

List Price$49.90Save 17%

In StockDetails



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0.25 UNIT
$41.42
1 UNIT
$105.41
5 UNITS
$427.00

About This Item

CAS Number:
EC Number:
MDL number:
UNSPSC Code:
41106310
eCl@ss:
32160414
NACRES:
NA.52

$41.42

List Price$49.90Save 17%

In StockDetails


grade

for molecular biology

Quality Level

form

lyophilized powder

mol wt

>45 kb

storage temp.

2-8°C

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General description

Escherichia coli strain B is most widely studied DNA after k-12. The genomes of E coli strain B and k-12 show differences in the IS sequence elements. Strain B have B-islands and express O-specific side-chain LPS.[1] The product is unsheared genomic DNA.

Specificity

50% GC; Tm = 90.5 °C

Application

The DNAs are particularly useful for genomic analysis, including PCR, library construction in bacteriophage λ, and in heterologous pre-hybridization and hybridization protocols.
Deoxyribonucleic acid sodium salt from Escherichia coli strain B has been used for:
  • PCR reactions of genomic DNA of Gardnerella vaginalis[2]
  • nick translation and radiolabeling of dNTP[3]
  • generating standard curve for 16S rDNA quantification[4]
  • transfecting neutrophils[5]
  • testing the extraction methods[6]

Unit Definition

One unit will yield an A260 of 1.0 in 1.0 ml of 1 mM Tris-HCl, pH 7.5, with 1 mM NaCl and 1 mM EDTA (1 cm light path).

Preparation Note

Purified by anion exchange chromatography, dialyzed against a solution of 1 mM sodium chloride, 1 mM EDTA and 1 mM Trizma HCl, pH 7.5 and lyophilized at a concentration of approx. 2 units per mL. Approx. 20 A260 units per mg DNA. % GC is the percentage of G/C base pairs. Tm is the temperature at the midpoint of the thermal denaturation profile.

Analysis Note

Analyzed by gel electrophoresis and visualization after ethidium bromide staining, with single predominant band of 45 kB or greater.

Other Notes

DNA in solution will reanneal on standing at room temperature so it is recommended to boil the solution for 10 minutes and then cool on ice for at least 5 minutes prior to use.

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Storage Class

11 - Combustible Solids

wgk_germany

WGK 3

flash_point_f

Not applicable

flash_point_c

Not applicable

ppe

Eyeshields, Gloves, type N95 (US)


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Genomic comparisons among Escherichia coli strains B, K-12, and O157: H7 using IS elements as molecular markers
Schneider D, et al.
BMC Microbiology, 2(1), 18-18 (2002)
Johan Sukweenadhi et al.
Antonie van Leeuwenhoek, 106(5), 935-945 (2014-08-30)
Strain DCY84(T), a Gram-stain positive, rod-shaped, aerobic, spore-forming bacterium, motile by means of peritrichous flagella, was isolated from humus soil from Yongin forest in Gyeonggi province, South Korea. Strain DCY84(T) shared the highest sequence similarity with Paenibacillus barengoltzii KACC 15270(T)
Rudolph Spangler et al.
PloS one, 4(9), e7010-e7010 (2009-09-16)
PCR in principle can detect a single target molecule in a reaction mixture. Contaminating bacterial DNA in reagents creates a practical limit on the use of PCR to detect dilute bacterial DNA in environmental or public health samples. The most
Mohamed El-Agamy Farh et al.
Journal of microbiology (Seoul, Korea), 55(10), 767-774 (2017-09-29)
Gram-staining-negative, uniflagellated, rod-shaped, designated as DCY110
Joseph W Duris et al.
Water research, 47(1), 300-314 (2012-11-15)
The occurrence and distribution of fecal indicator bacteria (FIB) and bacterial and protozoan pathogens are controlled by diverse factors. To investigate these factors in Pennsylvania streams, 217 samples were collected quarterly from a 27-station water-quality monitoring network from July 2007

Questions

  1. what is the absolute amount of DNA in this product is it 50µg?

    1 answer
    1. This product is supplied in a unit size. 1 unit of any DNA = 50 µg.

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