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927538

Sigma-Aldrich

AlkFAA-alkyne

≥95%

Synonym(s):

2-Fluoro-N-(hex-5-yn-1-yl)acrylamide

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About This Item

Empirical Formula (Hill Notation):
C9H12FNO
Molecular Weight:
169.20
UNSPSC Code:
12352101
NACRES:
NA.21

Quality Level

Assay

≥95%

form

semisolid

storage temp.

−20°C

SMILES string

O=C(NCCCCC#C)C(F)=C

Application

AlkFAA-alkyne is a Michael acceptor probe that was designed to label cysteines, but is not very effective. The compound can be used as a negative control when run with other cysteine-reactive probes. A method was developed using cysteine-reactive compounds to allow for unbiased analysis of proteomic data in quantitative applications . The method uses light or heavy labeling with the isotopically labelled desthiobiotin azide (isoDTB) tag for mass spectrometry analysis . Analysis then uses the isotopic tandem orthogonal proteolysis activity-based protein profiling (isoTOP-ABPP) workflow

related product

Product No.
Description
Pricing

Storage Class Code

10 - Combustible liquids

WGK

WGK 3

Flash Point(F)

Not applicable

Flash Point(C)

Not applicable


Certificates of Analysis (COA)

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Profiling the proteome-wide selectivity of diverse electrophiles.
Zanon P RA, et al.
ChemRxiv : the preprint server for chemistry (2021)
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Rapid development of bacterial resistance has led to an urgent need to find new druggable targets for antibiotics. In this context, residue-specific chemoproteomic approaches enable proteome-wide identification of binding sites for covalent inhibitors. Described here are easily synthesized isotopically labeled
Eranthie Weerapana et al.
Nature, 468(7325), 790-795 (2010-11-19)
Cysteine is the most intrinsically nucleophilic amino acid in proteins, where its reactivity is tuned to perform diverse biochemical functions. The absence of a consensus sequence that defines functional cysteines in proteins has hindered their discovery and characterization. Here we
Keriann M Backus et al.
Nature, 534(7608), 570-574 (2016-06-17)
Small molecules are powerful tools for investigating protein function and can serve as leads for new therapeutics. Most human proteins, however, lack small-molecule ligands, and entire protein classes are considered 'undruggable'. Fragment-based ligand discovery can identify small-molecule probes for proteins

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