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  • Association of the colorectal CpG island methylator phenotype with molecular features, risk factors, and family history.

Association of the colorectal CpG island methylator phenotype with molecular features, risk factors, and family history.

Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology (2015-01-15)
Daniel J Weisenberger, A Joan Levine, Tiffany I Long, Daniel D Buchanan, Rhiannon Walters, Mark Clendenning, Christophe Rosty, Amit D Joshi, Mariana C Stern, Loic LeMarchand, Noralane M Lindor, Darshana Daftary, Steven Gallinger, Teresa Selander, Bharati Bapat, Polly A Newcomb, Peter T Campbell, Graham Casey, Dennis J Ahnen, John A Baron, Robert W Haile, John L Hopper, Joanne P Young, Peter W Laird, Kimberly D Siegmund
ABSTRACT

The CpG island methylator phenotype (CIMP) represents a subset of colorectal cancers characterized by widespread aberrant DNA hypermethylation at select CpG islands. The risk factors and environmental exposures contributing to etiologic heterogeneity between CIMP and non-CIMP tumors are not known. We measured the CIMP status of 3,119 primary population-based colorectal cancer tumors from the multinational Colon Cancer Family Registry. Etiologic heterogeneity was assessed by a case-case study comparing risk factor frequency of colorectal cancer cases with CIMP and non-CIMP tumors using logistic regression to estimate the case-case odds ratio (ccOR). We found associations between tumor CIMP status and MSI-H (ccOR = 7.6), BRAF V600E mutation (ccOR = 59.8), proximal tumor site (ccOR = 9; all P < 0.0001), female sex [ccOR = 1.8; 95% confidence interval (CI), 1.5-2.1], older age (ccOR = 4.0 comparing over 70 years vs. under 50; 95% CI, 3.0-5.5), and family history of CRC (ccOR = 0.6; 95% CI, 0.5-0.7). While use of NSAIDs varied by tumor CIMP status for both males and females (P = 0.0001 and P = 0.02, respectively), use of multivitamin or calcium supplements did not. Only for female colorectal cancer was CIMP status associated with increased pack-years of smoking (Ptrend < 0.001) and body mass index (BMI; Ptrend = 0.03). The frequency of several colorectal cancer risk factors varied by CIMP status, and the associations of smoking and obesity with tumor subtype were evident only for females. Differences in the associations of a unique DNA methylation-based subgroup of colorectal cancer with important lifestyle and environmental exposures increase understanding of the molecular pathologic epidemiology of this heavily methylated subset of colorectal cancer. Cancer Epidemiol Biomarkers Prev; 24(3); 512-9. ©2015 AACR.

MATERIALS
Product Number
Brand
Product Description

Sigma-Aldrich
Hydriodic acid, JIS special grade, 55.0-58.0%
Sigma-Aldrich
Hydriodic acid, 57 wt. %, distilled, 99.999% trace metals basis
Sigma-Aldrich
Hydriodic acid, contains no stabilizer, distilled, 57 wt. % in H2O, 99.99% trace metals basis
Sigma-Aldrich
Hydriodic acid, 57 wt. % in H2O, distilled, stabilized, 99.95%
Sigma-Aldrich
Hydriodic acid, contains no stabilizer, ACS reagent, 55%
Sigma-Aldrich
Hydriodic acid, contains ≤1.5% hypophosphorous acid as stabilizer, ACS reagent, ≥47.0%