Accéder au contenu
MilliporeSigma

Urinary Volatile Organic Compounds for the Detection of Prostate Cancer.

PloS one (2015-11-26)
Tanzeela Khalid, Raphael Aggio, Paul White, Ben De Lacy Costello, Raj Persad, Huda Al-Kateb, Peter Jones, Chris S Probert, Norman Ratcliffe
RÉSUMÉ

The aim of this work was to investigate volatile organic compounds (VOCs) emanating from urine samples to determine whether they can be used to classify samples into those from prostate cancer and non-cancer groups. Participants were men referred for a trans-rectal ultrasound-guided prostate biopsy because of an elevated prostate specific antigen (PSA) level or abnormal findings on digital rectal examination. Urine samples were collected from patients with prostate cancer (n = 59) and cancer-free controls (n = 43), on the day of their biopsy, prior to their procedure. VOCs from the headspace of basified urine samples were extracted using solid-phase micro-extraction and analysed by gas chromatography/mass spectrometry. Classifiers were developed using Random Forest (RF) and Linear Discriminant Analysis (LDA) classification techniques. PSA alone had an accuracy of 62-64% in these samples. A model based on 4 VOCs, 2,6-dimethyl-7-octen-2-ol, pentanal, 3-octanone, and 2-octanone, was marginally more accurate 63-65%. When combined, PSA level and these four VOCs had mean accuracies of 74% and 65%, using RF and LDA, respectively. With repeated double cross-validation, the mean accuracies fell to 71% and 65%, using RF and LDA, respectively. Results from VOC profiling of urine headspace are encouraging and suggest that there are other metabolomic avenues worth exploring which could help improve the stratification of men at risk of prostate cancer. This study also adds to our knowledge on the profile of compounds found in basified urine, from controls and cancer patients, which is useful information for future studies comparing the urine from patients with other disease states.

MATÉRIAUX
Référence du produit
Marque
Description du produit

Sigma-Aldrich
Hydroxyde de sodium, ACS reagent, ≥97.0%, pellets
Sigma-Aldrich
Hydroxyde de sodium, reagent grade, ≥98%, pellets (anhydrous)
Sigma-Aldrich
Hydroxyde de sodium solution, 50% in H2O
Sigma-Aldrich
Hydroxyde de sodium solution, BioUltra, for molecular biology, 10 M in H2O
Sigma-Aldrich
Hydroxyde de sodium, BioXtra, ≥98% (acidimetric), pellets (anhydrous)
Sigma-Aldrich
Hydroxyde de sodium solution, 1.0 N, BioReagent, suitable for cell culture
Sigma-Aldrich
Hydroxyde de sodium, puriss. p.a., ACS reagent, reag. Ph. Eur., K ≤0.02%, ≥98%, pellets
Sigma-Aldrich
Hydroxyde de sodium, puriss., meets analytical specification of Ph. Eur., BP, NF, E524, 98-100.5%, pellets
Sigma-Aldrich
Hydroxyde de sodium, reagent grade, 97%, powder
Sigma-Aldrich
Hydroxyde de sodium, pellets, semiconductor grade, 99.99% trace metals basis
Supelco
Fibres SPME Divinylbenzene/Carboxen/Polydimethylsiloxane (DVB/CAR/PDMS), needle size 24 ga, StableFlex
Supelco
Fibres SPME Divinylbenzene/Carboxen/Polydimethylsiloxane (DVB/CAR/PDMS), needle size 24 ga, for use with manual holder
Sigma-Aldrich
Hydroxyde de sodium solution, 5.0 M
Supelco
Fibres SPME Divinylbenzene/Carboxen/Polydimethylsiloxane (DVB/CAR/PDMS), needle size 23 ga, StableFlex, for use with autosampler
Sigma-Aldrich
Hydroxyde de sodium, puriss. p.a., ACS reagent, K ≤0.02%, ≥98.0% (T), pellets
Supelco
Fibres SPME Divinylbenzene/Carboxen/Polydimethylsiloxane (DVB/CAR/PDMS), needle size 23 ga, StableFlex, for use with manual holder or autosampler, fiber L 2 cm
Sigma-Aldrich
Hydroxyde de sodium, beads, 16-60 mesh, reagent grade, 97%
Supelco
Fibres SPME Divinylbenzene/Carboxen/Polydimethylsiloxane (DVB/CAR/PDMS), needle size 24 ga, StableFlex, for use with autosampler
Supelco
Fibres SPME Polydimethylsiloxane (PDMS), df 100 μm(PDMS, needle size 24 ga, for use with manual holder
Sigma-Aldrich
Hydroxyde de sodium, reagent grade, 97%, flakes
Supelco
Fibres SPME Polydimethylsiloxane (PDMS), df 100 μm(PDMS, for use with autosampler, needle size 23 ga
Sigma-Aldrich
Hydroxyde de sodium, BioUltra, for luminescence, ≥98.0% (T), pellets
Supelco
Fibres SPME Polydimethylsiloxane (PDMS), df 100 μm(PDMS, for use with autosampler, needle size 24 ga
Supelco
Unité de fibres SPME, carboxène/polydiméthylsiloxane (CAR/PDMS), df 75 μm(CAR/PDMS, for use with manual holder, needle size 24 ga
Sigma-Aldrich
Poly(dimethylsiloxane), viscosity 1.0 cSt (25 °C)
Sigma-Aldrich
Hydroxyde de sodium, ultra dry, powder or crystals, 99.99% trace metals basis
Supelco
Unité de fibres SPME, Polydiméthylsiloxane/divinylbenzène (PDMS/DVB), df 65 μm(PDMS/DVB, needle size 24 ga, StableFlex, for use with autosampler
Supelco
Unité de fibres SPME, carboxène/polydiméthylsiloxane (CAR/PDMS), df 85 μm(CAR/PDMS, needle size 23 ga, StableFlex, for use with autosampler
Sigma-Aldrich
Hydroxyde de sodium solution, purum, ≥32%
Supelco
Unité de fibres SPME, Polydiméthylsiloxane/divinylbenzène (PDMS/DVB), df 65 μm(PDMS/DVB, needle size 24 ga, for use with manual holder