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  • A generic approach to study the kinetics of liquid-liquid phase separation under near-native conditions.

A generic approach to study the kinetics of liquid-liquid phase separation under near-native conditions.

Communications biology (2021-01-21)
Joris Van Lindt, Anna Bratek-Skicki, Phuong N Nguyen, Donya Pakravan, Luis F Durán-Armenta, Agnes Tantos, Rita Pancsa, Ludo Van Den Bosch, Dominique Maes, Peter Tompa
ABSTRACT

Understanding the kinetics, thermodynamics, and molecular mechanisms of liquid-liquid phase separation (LLPS) is of paramount importance in cell biology, requiring reproducible methods for studying often severely aggregation-prone proteins. Frequently applied approaches for inducing LLPS, such as dilution of the protein from an urea-containing solution or cleavage of its fused solubility tag, often lead to very different kinetic behaviors. Here we demonstrate that at carefully selected pH values proteins such as the low-complexity domain of hnRNPA2, TDP-43, and NUP98, or the stress protein ERD14, can be kept in solution and their LLPS can then be induced by a jump to native pH. This approach represents a generic method for studying the full kinetic trajectory of LLPS under near native conditions that can be easily controlled, providing a platform for the characterization of physiologically relevant phase-separation behavior of diverse proteins.

MATERIALS
Product Number
Brand
Product Description

Sigma-Aldrich
Benzamidine hydrochloride, 99%
Sigma-Aldrich
6-Benzylaminopurine hydrochloride, suitable for plant cell culture, ≥98%