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  • Is a nitrogen atom an important pharmacophoric element in sigma ligand binding?

Is a nitrogen atom an important pharmacophoric element in sigma ligand binding?

Bioorganic & medicinal chemistry (2000-09-26)
S Y Ablordeppey, J B Fischer, R A Glennon
ABSTRACT

A lingering question in sigma receptor ligand development is whether a nitrogen atom serves as an important pharmacophoric element in binding affinity. To address this question, we have synthesized several phenylalkylpiperidines and phenylalkylpiperazines and demonstrated that removal of the N atom from a typical phenylalkylpiperidine led to little or no binding to sigma receptors. In addition, where two N atoms occur in a compound, such as with phenylalkylpiperazines, the N atom on the longer alkyl chain appears to be more important. Thus, based on this study, the N atom is an important pharmacophoric element in the binding of phenylalkylpiperidines and phenylalkylpiperazines to sigma receptors.