Saltar al contenido
Merck

Multi-target spectral moment QSAR versus ANN for antiparasitic drugs against different parasite species.

Bioorganic & medicinal chemistry (2010-02-27)
Francisco J Prado-Prado, Xerardo García-Mera, Humberto González-Díaz
RESUMEN

There are many of pathogen parasite species with different susceptibility profile to antiparasitic drugs. Unfortunately, almost QSAR models predict the biological activity of drugs against only one parasite species. Consequently, predicting the probability with which a drug is active against different species with a single unify model is a goal of the major importance. In so doing, we use Markov Chains theory to calculate new multi-target spectral moments to fit a QSAR model that predict by the first time a mt-QSAR model for 500 drugs tested in the literature against 16 parasite species and other 207 drugs no tested in the literature using spectral moments. The data was processed by linear discriminant analysis (LDA) classifying drugs as active or non-active against the different tested parasite species. The model correctly classifies 311 out of 358 active compounds (86.9%) and 2328 out of 2577 non-active compounds (90.3%) in training series. Overall training performance was 89.9%. Validation of the model was carried out by means of external predicting series. In these series the model classified correctly 157 out 190, 82.6% of antiparasitic compounds and 1151 out of 1277 non-active compounds (90.1%). Overall predictability performance was 89.2%. In addition we developed four types of non Linear Artificial neural networks (ANN) and we compared with the mt-QSAR model. The improved ANN model had an overall training performance was 87%. The present work report the first attempts to calculate within a unify framework probabilities of antiparasitic action of drugs against different parasite species based on spectral moment analysis.

MATERIALES
Referencia del producto
Marca
Descripción del producto

Sigma-Aldrich
Dexametasona, powder, BioReagent, suitable for cell culture, ≥97%
Sigma-Aldrich
Bromuro de hexadeciltrimetilamonio, ≥98%
Sigma-Aldrich
Ácido L-ascórbico, powder, suitable for cell culture, γ-irradiated
Sigma-Aldrich
Ácido L-ascórbico, BioXtra, ≥99.0%, crystalline
Sigma-Aldrich
Bromuro de hexadeciltrimetilamonio, for molecular biology, ≥99%
Sigma-Aldrich
Rifampicina, ≥95% (HPLC), powder or crystals
Sigma-Aldrich
Ácido valproico sodium salt, 98%
Sigma-Aldrich
β-Estradiol, BioReagent, powder, suitable for cell culture
Sigma-Aldrich
Ácido L-ascórbico, suitable for cell culture, suitable for plant cell culture, ≥98%
Sigma-Aldrich
Dexametasona, ≥98% (HPLC), powder
Sigma-Aldrich
β-Estradiol, ≥98%
Sigma-Aldrich
3,4-Dihidroxi-L-fenilalanina, ≥98% (TLC)
Sigma-Aldrich
Acetylsalicylic acid, ≥99.0%
Sigma-Aldrich
Ibuprofen, ≥98% (GC)
Sigma-Aldrich
Lidocaine, powder
Sigma-Aldrich
Bromuro de hexadeciltrimetilamonio, BioXtra, ≥99%
Sigma-Aldrich
Ácido L-ascórbico, reagent grade, crystalline
Sigma-Aldrich
Erythromycin, BioReagent, suitable for cell culture
Sigma-Aldrich
Indomethacin, 98.5-100.5% (in accordance with EP)
Sigma-Aldrich
6-Aminocaproic acid, ≥99% (titration), powder
Sigma-Aldrich
Hydroxyurea, 98%, powder
Sigma-Aldrich
Trimetoprim, ≥98.5%
Sigma-Aldrich
Cytosine β-D-arabinofuranoside, crystalline, ≥90% (HPLC)
Sigma-Aldrich
Progesterone, powder, BioReagent, suitable for cell culture
Sigma-Aldrich
Theophylline, anhydrous, ≥99%, powder
Sigma-Aldrich
Tetracycline, 98.0-102.0% (HPLC)
Supelco
Ácido L-ascórbico, analytical standard
Sigma-Aldrich
Progesterone, ≥99%
Sigma-Aldrich
Ácido L-ascórbico, reagent grade
Sigma-Aldrich
Piperine, ≥97%