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  • Biocatalytic potential of Pseudolycoriella CAZymes (Sciaroidea, Diptera) in degrading plant and fungal cell wall polysaccharides.

Biocatalytic potential of Pseudolycoriella CAZymes (Sciaroidea, Diptera) in degrading plant and fungal cell wall polysaccharides.

iScience (2023-04-07)
Vitor Trinca, Sibeli Carli, João Vitor Cardoso Uliana, Carolina Victal Garbelotti, Mariana Mendes da Silva, Vitor Kunes, Luana Parras Meleiro, Guilherme Thomaz Pereira Brancini, Frank Menzel, Luiz Paulo Moura Andrioli, Tatiana Teixeira Torres, Richard John Ward, Nadia Monesi
ABSTRACT

Soil biota has a crucial impact on soil ecology, global climate changes, and effective crop management and studying the diverse ecological roles of dipteran larvae deepens the understanding of soil food webs. A multi-omics study of Pseudolycoriella hygida comb. nov. (Diptera: Sciaroidea: Sciaridae) aimed to characterize carbohydrate-active enzymes (CAZymes) for litter degradation in this species. Manual curation of 17,881 predicted proteins in the Psl. hygida genome identified 137 secreted CAZymes, of which 33 are present in the saliva proteome, and broadly confirmed by saliva CAZyme catalytic profiling against plant cell wall polysaccharides and pNP-glycosyl substrates. Comparisons with two other sciarid species and the outgroup Lucilia cuprina (Diptera: Calliphoridae) identified 42 CAZyme families defining a sciarid CAZyme profile. The litter-degrading potential of sciarids corroborates their significant role as decomposers, yields insights to the evolution of insect feeding habits, and highlights the importance of insects as a source of biotechnologically relevant enzymes.

MATERIALS
Product Number
Brand
Product Description

Sigma-Aldrich
4-Nitrophenyl β-D-mannopyranoside, ≥98%
Sigma-Aldrich
Chitin from shrimp shells, BioReagent, suitable for analysis of chitinase, purified powder
Sigma-Aldrich
4-Nitrophenyl α-D-xylopyranoside, α-xylosidase substrate