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  • Aniline-phenol recognition: from solution through supramolecular synthons to cocrystals.

Aniline-phenol recognition: from solution through supramolecular synthons to cocrystals.

IUCrJ (2014-07-31)
Arijit Mukherjee, Karuna Dixit, Siddhartha P Sarma, Gautam R Desiraju
ABSTRACT

Aniline-phenol recognition is studied in the crystal engineering context in several 1:1 cocrystals that contain a closed cyclic hydrogen-bonded [⋯O-H⋯N-H⋯]2 tetramer supramolecular synthon (II). Twelve cocrystals of 3,4,5- and 2,3,4-trichlorophenol with one of eight halogenated anilines have been characterized. Ten of these cocrystals contain an extended octamer synthon that is assembled with hydrogen bonding and π⋯π stacking that defines a Long-Range Synthon Aufbau Module (LSAM). The design strategy is, therefore, based on the construction and transferability of the LSAM, which is a dimer of tetramers. Using the LSAM concept, two short cell axes in the crystal structures can be predicted. Whilst one of them is dictated by synthon II, the other one is dominated by π⋯π interactions. The third cell axis can also be predicted, in some cases, by systematic tuning of the halogen bonds. The design strategy is also verified in cocrystals of non-halogenated precursors. The observation of this large synthon in so many structures points to its stability and possible existence in solution. To this end, one-dimensional (1)H and (15)N NMR studies, performed on the 3,4,5-trichlorophenol-3,5-dichloroaniline cocrystal in CDCl3, show characteristic downfield shifts that point to a π⋯π stacked structure and to the robustness of the hydrogen-bonded aggregates. Nuclear Overhauser effects point to hydrogen bonding between aniline and phenol molecules in the aggregates. Diffusion-ordered spectroscopy and T 1 inversion recovery experiments show that stacking is present in concentrated solution and lost at a certain dilution. A sequence of events is therefore established: molecules of the aniline and the phenol associate via hydrogen bonding to form tetramers, and tetramers subsequently stack to form octamers.

MATERIALS
Product Number
Brand
Product Description

Sigma-Aldrich
Aniline, ACS reagent, ≥99.5%
Sigma-Aldrich
Aniline, ReagentPlus®, 99%
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1,2,3-Trichlorobenzene, 99%
Sigma-Aldrich
Phenol, natural, 97%, FG
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Phenol, BioUltra, for molecular biology, TE-saturated, ~73% (T)
Sigma-Aldrich
Phenol, unstabilized, purified by redistillation, ≥99%
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Phenol, unstabilized, ReagentPlus®, ≥99%
Sigma-Aldrich
Phenol, puriss., meets analytical specification of Ph. Eur., BP, USP, 99.5-100.5% (GC)
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Phenol, puriss., ≥99.5% (GC), meets analytical specification of Ph. Eur., BP, USP, crystalline (detached)
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Phenol, ≥96.0% (calc. on dry substance, T)
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Phenol, ≥99%
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Phenol, contains hypophosphorous as stabilizer, loose crystals, ACS reagent, ≥99.0%
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Phenol solution, BioReagent, Saturated with 0.01 M citrate buffer, pH 4.3 ± 0.2, for molecular biology
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Phenol, for molecular biology
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Liquified Phenol, ≥89.0%
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Phenol, puriss. p.a., ACS reagent, reag. Ph. Eur., 99.0-100.5%
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Phenol solution, BioReagent, Equilibrated with 10 mM Tris HCl, pH 8.0, 1 mM EDTA, for molecular biology
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Phenol, BioXtra, ≥99.5% (GC)